About me

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I am currently working as a post doctoral research scientist. I am based in IST Austria, and previously at the Oxford university. I am working in Dr. Tim Vogels’ group, for the ICGeneology project.

I completed my Ph.D at the Nencki Institute of Experimental Biology, Warsaw, Poland. I was working in the laboratory of Neuroinformatics, under the supervision of Prof. Hab. Daniel K. Wójcik. Here, I studied the propagation of currents in a brain tissue.

Before this, I was working at National Center for Biological Sciences, Bangalore, in the laboratory of Prof. Upinder S. Bhalla, where I was involved in development of user interface for MOOSE v2.0 and in the visualization tool called Moogli.

In my previous life, I was writing software for modems and building components for a Solar telescope.

Select publications:

  1. Modelling and Analysis of Electrical Potentials Recorded in Microelectrode Arrays (MEAs), Neuroinformatics, 2015. Link
  2. NSDF: Neuroscience Simulation Data Format, Neuroinformatics, 2015. Link
  3. Collection of Simulated Data from a Thalamocortical Network Model, Neuroinformatics, 2016. Link
  4. Corrected Four-Sphere Head Model for EEG Signals, Frontiers in Neuroscience, 2017. Link
  5. Training deep neural density estimators to identify mechanistic models of neural dynamics, eLife, 2020. Link
  6. [pre-print] kCSD-python, a tool for reliable current source density estimation. Link

Current projects:

  1. A lead-field map of a rat brain using DTI images (work in progress)
  2. kernal Electrical Source Imaging – a python package (work in progress, github)
  3. Curating existing ion channel (work in progress)
  4. A-type Potassium channels HH model (work in progress)

I teach the course ‘Python Programming for Biologists‘ with my colleague Dr. Szymon  Łęski

My github page

My researchgate page

* Photography by Katerina Christodoulou (Instagram)